GSM6637745: DNase-seq from activated B cell (ENCLB557KXE); Homo sapie... - SRA

SRX17911852: GSM6637745: DNase-seq from activated B cell (ENCLB557KXE); Homo sapiens; DNase-Hypersensitivity
2 ILLUMINA (Illumina NovaSeq 6000) runs: 66.7M spots, 13.5G bases, 3.8Gb downloads

Submitted by: NCBI (GEO)

Study: GSE59395: Genome-wide map of regulatory interactions in the human genome

PRJNA63443 • SRP012412 • All experiments • All runs

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Summary: We generated a genome-wide interaction map of regulatory elements in human cells (K562, GM12878) using Chromatin Interaction Analysis by Paired-End Tag sequencing (ChIA-PET) experiments targeting six broadly distributed factors. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Overall Design: Chromatin interactions identified by ChIA-PET for 4 different histone modifications, RAD21 and RNAPII in K562 cell line, two biological replicates each.

Sample: ENCODE biosample ENCBS175FVF

SAMN30347586 • SRS15428076 • All experiments • All runs

Organism: Homo sapiens

Library:

Instrument: Illumina NovaSeq 6000

Strategy: DNase-Hypersensitivity

Source: GENOMIC

Selection: DNase

Layout: PAIRED

Construction protocol: extraction protocol: https://www.encodeproject.org/documents/980de32c-f7ec-4cd7-b736-61faf723c186/@@download/attachment/newnuclei_isolation_from_human_tissue-combined.pdf

Experiment attributes:

GEO Accession: GSM6637745

Links:

NCBI link: NCBI Entrez (gds)

Runs: 2 runs, 66.7M spots, 13.5G bases, 3.8Gb

Run	# of Spots	# of Bases	Size	Published
SRR21926946	39,655,378	8G	2.2Gb	2022-10-17
SRR21926947	27,000,009	5.5G	1.6Gb	2022-10-17

ID:: 24850442

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